chore: refresh graphify map and tidy AGENTS.md
graphify update regeneration: semantic hashes now populated in manifest.json, graph rebuilt (1634 nodes, 3179 edges). Track the map (5 curated files + .graphify_root) so a fresh checkout starts with it; cost.json, cache/, dated snapshots and .rebuild.lock stay ignored. AGENTS.md: drop stale Relevant skills and Notes sections; graphify rule now says to always query the graph first.
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